PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26763
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26392.5 Da    PI: 4.8338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26763genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.7e-202474656
              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +ft+eq++ Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  OIT26763 24 RFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74
              7*************************************************9 PP
2HD-ZIP_I/II119.61.7e-3823112493
  HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +r+++eqvklLE++F++e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+ ++y+ Lk+++d+l+ + e+L++e+e+L ++l+e
     OIT26763  23 KRFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMKHEYRLLKAEFDKLNMQFESLKQEKESLLKQLEE 112
                  8************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE TKLEPRKKLE LARDLGLQPR  60
QVAIWFQNRR ARWKSKQMKH EYRLLKAEFD KLNMQFESLK QEKESLLKQL EELNDQLENN  120
HAGCSRGQDS LDSEIYTCSE NGGTDLELMD NIIPGCLNAS VEGKRVNEVE NDREGTLIEH  180
FRWKEEPEFW NMEELGDSSL GSPGHWCAVG LGRTFDLSCG NSKWWEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-34HD-ZIP family protein