PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT26733

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 663aa MW: 74678.5 Da PI: 10.1527

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26733	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	3e-10	12	64	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W+t+E++ll+ avk++G ++W+++a +++ +t+ ck+++++++ OIT26733 12 TTWSTWEELLLAFAVKRHGLKDWESVAMELQsrsslpALLTAQICKDKYRDLR 64 68********************************9889*******9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MEKESGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY 60 RDLRRRFINK NNIYEDEKFN DVIDDGVDGD GDVTIPWIEE LRQLRVAELK QEVQRYDLSI 120 QSLQLKVKKM EEEREQSLKE ESLDDGQKPD LEDVKEERSQ NDKNSGADGK PEESTGKAVS 180 SEESDRENRS FNESNSTENR EIGVKNEPEP VETDEFRPVQ EVKPVSEEDS YNGSSSDRHE 240 EKKISRESGE SKEETKENSD VQSTATLTKK KRQRGGDGGR SGGDAVETGS PAVGLNKGEG 300 AAKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KTDKYKSMIR RHMDLETVQV RIDDGSYCSC 360 PSKFYLDLLL IFNNAIVYFP KSSPESTAAN ELRGIVMDEL KRKRTQQKDS SPGPGPLRIQ 420 PKPKLERSDS LLAKHKSTAP IVVCRKRSSI SAKAAASGNI KPEKQTDIKP PLNPKPPIKT 480 SSNEEESSIK LGMKEKPVTG VRSMRRSNKG RPNNNASQSN NHQTTNTKQT NTNVDKKEEA 540 KTEKKKEEAK KRGAAADFLK RIKKNSPTKG TLMEALKNPT EDVAIKGNKR EQQKKKVDER 600 RETPVKRNGG SGGGGGKEEG SPSKRSVGRP PKRGGKETVQ EKRRRENSEK DDSSKRPKKR 660 SRR

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MEKESGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINK NNIYEDEKFN DVIDDGVDGD GDVTIPWIEE LRQLRVAELK QEVQRYDLSI  120
QSLQLKVKKM EEEREQSLKE ESLDDGQKPD LEDVKEERSQ NDKNSGADGK PEESTGKAVS  180
SEESDRENRS FNESNSTENR EIGVKNEPEP VETDEFRPVQ EVKPVSEEDS YNGSSSDRHE  240
EKKISRESGE SKEETKENSD VQSTATLTKK KRQRGGDGGR SGGDAVETGS PAVGLNKGEG  300
AAKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KTDKYKSMIR RHMDLETVQV RIDDGSYCSC  360
PSKFYLDLLL IFNNAIVYFP KSSPESTAAN ELRGIVMDEL KRKRTQQKDS SPGPGPLRIQ  420
PKPKLERSDS LLAKHKSTAP IVVCRKRSSI SAKAAASGNI KPEKQTDIKP PLNPKPPIKT  480
SSNEEESSIK LGMKEKPVTG VRSMRRSNKG RPNNNASQSN NHQTTNTKQT NTNVDKKEEA  540
KTEKKKEEAK KRGAAADFLK RIKKNSPTKG TLMEALKNPT EDVAIKGNKR EQQKKKVDER  600
RETPVKRNGG SGGGGGKEEG SPSKRSVGRP PKRGGKETVQ EKRRRENSEK DDSSKRPKKR  660
SRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	274	KKKRQR
2	655	663	KRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-82	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT26733