PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26602
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 438aa    MW: 48014.4 Da    PI: 8.6021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26602genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.14.6e-40612152137
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++++ + ++  +++++ss++ +++ +             
  OIT26602  61 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLNAFPDTQQiSEDKRSSAGTEQGLDsaevemegdpnyq 161
               689*************************************************************4444433322222222222222223344444455555 PP

       TCP  89 ....kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137
                    + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n
  OIT26602 162 qqqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 215
               55546677777999999999999*****9*******************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MEVDEIQKQG CKFPRIRNGN GRFESQDENE AVKGSHGLGG GGIGRLCGWP SNRIVRVSRA  60
SGGKDRHSKV WTSKGLRDRR VRLSVNTAIQ FYDLQDRLGY DQPSKAVEWL LKAAAPSISE  120
LPSLNAFPDT QQISEDKRSS AGTEQGLDSA EVEMEGDPNY QQQQHVSLSK SACSSTSETS  180
KGSGLSLSRS ENRVKARERA RERAAEKEKE KEKENESTRT AHHQNVHRIS QNSSFTELLT  240
GGMNNNITCN GRGSETNLFN KSPRQWSSSS PFEYFPSGLL GLRGNDNSTS GFHLGNPIQQ  300
QPLPVSSPMF SITGDHHPEL QHFPFLSDHL GTNGHASNSA NEYNLNFSIS SSSSSGLAGY  360
NRGTLQSNSS SLLPHFQRYE GSQSFFNGST IAAATAPNNT AAASVDNHHH FLSAYDAGRL  420
HLFYNDSRHS DQKGKGKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.16e-38TCP family protein