PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26588
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 317aa    MW: 35102.3 Da    PI: 10.3328
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26588genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.3e-19163196134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OIT26588 163 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 196
               *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MIPTYRNSSS SSPSFPFELN DNNNKVHDLS HINPLVSPSY QVASSSSYSS CQTFFNNSST  60
NQDQTRYYHS QFYQPQHQPE VDNFASRSGS HDHLEKKNKG LKLTLWKKGD KLMQKMKNSD  120
HSHIKLKLED QKKQQSSPNL ETDYSSNSSS NNSNNNNIPI RACSDCNTTK TPLWRSGPKG  180
PKSLCNACGI RQRKARRAMA AAAAAAAAAN GTNFTTETST TTATAMKIKV QQKQKITTKV  240
NKNHVVPFKK RCKFITSTTT AAVGSSSSTI NNAQKKLCFE DFFVNLSNNL ALHRVFPQDE  300
KEAAILLMAL SSGLVHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-18GATA family protein