PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT26461

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 737aa MW: 85753.9 Da PI: 9.0217

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26461	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.6e-20	166	259	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++Ak+ GFsvr++++ s ++ i+k+++vC + g ++++k +++++r+r+++r++Ckak+ v k+ +w v +++ HnHel OIT26461 166 NYYMNFAKSFGFSVRRDRHLGSvEHPMGIYKKDYVCHRAGIPRPQKVVEKERQRNRKSSRCNCKAKMSVAKDIfdgITRWTVVYFDNVHNHELL 259 69**************9999666777**************99999999************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MMKSSNDNNE FQSLRSTFGD LTLESLKTKG RLEYAKKESQ RVLQIVQCFP ENEHMSEEHE 60 HVSISQSIES NSLGEDYHIF TTISDKGKKK RKKDSKRMDK EAIRALFEVV LNLKITSKGG 120 NTNSHNSKTG TTTTSNEELR KENVIHISDG DLQVGKVFDS DDEAYNYYMN FAKSFGFSVR 180 RDRHLGSVEH PMGIYKKDYV CHRAGIPRPQ KVVEKERQRN RKSSRCNCKA KMSVAKDIFD 240 GITRWTVVYF DNVHNHELLS DKEKRDRIRK GSRSGQLPFT EKDIRNFVQS ESSTNIESDA 300 LELLKICKSL KDKDVDFQYD FIVDGCQRLE HVIWAFGDSI HAYDVFGDLV VFDTTYRLNR 360 YEMPLGVWIG VDNHVATVVS IRNHAGEEPT MRQKYYNPQI KKFMAIEKHA SKVLTPFAFE 420 LLQDEMILSV EYGLFPHTDG SYLVRHYSKT DGGRFVYWNS IEEVVQCSYQ KFEFSGILCR 480 RSIRVINAHN YFMLPDKYLL ARWRQENPLV LKFTHMMKSS NNNNEFQSLH STFRDLTLES 540 LKTKDEDYHI ENPQQSHTKG RKKGKRLAGG NEAAKKLRYC KVPNCGGTGH DSRILCRHSI 600 RALTAHNYFM LPDKYLLARW RQENPFVLKF THMMKSSNDN NEFESLHSTF RDLILESLKT 660 KGRLEYAKQE LQRVLQIDQC FPENEHLSEE HEHVSISQSI ESNSLDEDYH IENSQQSQTK 720 GRKRGKRLVG GIKLQRN

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MMKSSNDNNE FQSLRSTFGD LTLESLKTKG RLEYAKKESQ RVLQIVQCFP ENEHMSEEHE  60
HVSISQSIES NSLGEDYHIF TTISDKGKKK RKKDSKRMDK EAIRALFEVV LNLKITSKGG  120
NTNSHNSKTG TTTTSNEELR KENVIHISDG DLQVGKVFDS DDEAYNYYMN FAKSFGFSVR  180
RDRHLGSVEH PMGIYKKDYV CHRAGIPRPQ KVVEKERQRN RKSSRCNCKA KMSVAKDIFD  240
GITRWTVVYF DNVHNHELLS DKEKRDRIRK GSRSGQLPFT EKDIRNFVQS ESSTNIESDA  300
LELLKICKSL KDKDVDFQYD FIVDGCQRLE HVIWAFGDSI HAYDVFGDLV VFDTTYRLNR  360
YEMPLGVWIG VDNHVATVVS IRNHAGEEPT MRQKYYNPQI KKFMAIEKHA SKVLTPFAFE  420
LLQDEMILSV EYGLFPHTDG SYLVRHYSKT DGGRFVYWNS IEEVVQCSYQ KFEFSGILCR  480
RSIRVINAHN YFMLPDKYLL ARWRQENPLV LKFTHMMKSS NNNNEFQSLH STFRDLTLES  540
LKTKDEDYHI ENPQQSHTKG RKKGKRLAGG NEAAKKLRYC KVPNCGGTGH DSRILCRHSI  600
RALTAHNYFM LPDKYLLARW RQENPFVLKF THMMKSSNDN NEFESLHSTF RDLILESLKT  660
KGRLEYAKQE LQRVLQIDQC FPENEHLSEE HEHVSISQSI ESNSLDEDYH IENSQQSQTK  720
GRKRGKRLVG GIKLQRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	KKRKK
2	560	567	GRKKGKRL
3	721	728	GRKKGKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-61	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT26461