PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26363
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 709aa    MW: 79755 Da    PI: 5.4316
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26363genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.12.8e-1063327052374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL++cAea +s + +   ++L+++++++sp gdp+ Rla +f++AL+ar a+   +  +++++ + s  +s++ l+a++++  ++P+ ++s++ aN+ I
  OIT26363 332 TSLLTRCAEAAASYNSKTFVEVLSKIRQHSSPFGDPTARLAYCFANALEARFAG---GGGDTITTPKRSVLSSAHFLKAYQVYITACPFKRMSNIFANKSI 429
               689***************************************************...4455555555555669**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                + ++++ ++HiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g   +e++eetg+rL+++++++gvpfe+++ +ak+++d++le+L+++++E+
  OIT26363 430 AKLTSEAPKIHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDIKLEDLNLEQDET 529
               **************************************************9*****************************.7******************* PP

      GRAS 202 laVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
               ++Vn+ ++l+++++e++ ++    +r++vL+l+k+++P+ +v+   +a +n++ F +rf eal ++s+ fd++ea++ re+e r+  E+e++gr+i+nv+a
  OIT26363 530 VVVNCLYRLKNVPNETLLTNGnnnPRNAVLRLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEGRMIFEQEVFGRDIMNVIA 630
               ***************9877655569**************************************************************************** PP

      GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++   + v+e+s+++++gWk+r ++++S+W+
  OIT26363 631 SEGTERVERPESYKQWSVRNQIAGFRQLPLDQDIVKEVKAKVRMFYHTDFLVDEDSNWMLQGWKGRIMYALSVWQ 705
               **********************************************888*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MNTNTTYFPS VDPTDGLEFC HRFALTSTNL GNEFSSTDNH DVVFFSLSSG TSLNNDEVVV  60
EDGGGGCDQT VVESDYFDGV FKYIQQMLLE EEDDLESRPC MFQDCIALQA AEKSFYDALT  120
DNNNNNNNNP TIVGHCSSTD FPVNHGFIST IHCLQDDNFN HFLDQSDLIS DLNGSNTGIR  180
GNTPLSNNCQ VVAVASAVVV AGANDDHRNI YYGVNSTNTN NQGGASKSEE KKKHNREDCG  240
ESSNGPNSKQ FASNGAEETE EKTHEEYYDK ALLCPDMNPA FYVEDSCDDG SRSSSENAAW  300
DKQKSPHIKQ SKRGRPRGTK KGVKTNEVVD LTSLLTRCAE AAASYNSKTF VEVLSKIRQH  360
SSPFGDPTAR LAYCFANALE ARFAGGGGDT ITTPKRSVLS SAHFLKAYQV YITACPFKRM  420
SNIFANKSIA KLTSEAPKIH IIDFGILYGF QWPCIIHGIS LRPGGPPKLK ITGIDFPQPG  480
FRPAERVEET GRRLENYCKR FGVPFEYKAI AKKWDDIKLE DLNLEQDETV VVNCLYRLKN  540
VPNETLLTNG NNNPRNAVLR LIKEINPHWF VHGIVNAMYN ASFFTTRFRE ALFHFSSQFD  600
MFEATMTRED EGRMIFEQEV FGRDIMNVIA SEGTERVERP ESYKQWSVRN QIAGFRQLPL  660
DQDIVKEVKA KVRMFYHTDF LVDEDSNWML QGWKGRIMYA LSVWQPIHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-153GRAS family protein