PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26193
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 819aa    MW: 89162.7 Da    PI: 6.4408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26193genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.92.9e-1264418002374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp ++ +   +++ ++a+++f+ +sP++kfsh+taNqaI
  OIT26193 441 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAISARLLNSCLGIYAALPITNVPVLYTQKMASAFQVFNGISPFIKFSHFTANQAI 541
               579******************************************************************999***************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + va+++ +l++e+L+v+++Ea+a
  OIT26193 542 QEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAERLGLPFEFLP-VADKVGNLDPEKLNVSKREAVA 637
               ***********************************************....***************************.7********************* PP

      GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
               V++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+a  g +
  OIT26193 638 VHWLQ--HSLYDVTGSDSN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPS 731
               ****9..999999999999....**********************.899**************************************************** PP

      GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               r  + + +++Wre+l+++GF++++l  +aa+qa lll +++s+gy++ e++g+l lgWkd  L+++SaWr
  OIT26193 732 RSGEVK-FNNWREKLQQSGFRSISLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 800
               888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MAKAFPLDGN NCANTSANVG GSSTSQSKDI NNLQPSPSCE LGNNSKMVRK RAASDMEIQT  60
GAGEENRYLR RPVTIGGSHS QLGDLSACGT SNLRHVSNYS TMQMLPSSTN VCGVTSKGAD  120
FTGFSNSIPN LINYTDAITS SHHIQQQNLN NNNNQSPSVC VFSGLPLFPP DRNRQNGSVL  180
LQQQPTSAAA VLASPLTTTA ASMEESATSA TAWIDGIIKD LINSSAQVSV PQLIQNVREI  240
IHPCNPYLAS LLEYRLRSLT SNSTNNNNSG ASADVHNDAA AMEFWRRKEG VLPQLASLQH  300
GQNMNPNSLQ QHNILSLPDS SNNHYLNWDM AAPVAPSLNQ HQQISSNNNP AVTADLSFVT  360
SPPILPPQLQ QQDSSHSQQQ AAVDLEQQKQ QQSSSTSLSP TSATHSAKTK TTTPVVPIST  420
YREKKEEERQ QKRDEDGLHL LTLLLQCAEA VSADNLEEAN KMLLEVSELS TPFGTSAQRV  480
AAYFSEAISA RLLNSCLGIY AALPITNVPV LYTQKMASAF QVFNGISPFI KFSHFTANQA  540
IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI LASRPGGPPF VRLTGLGTSM DALEATGKRL  600
SDFAERLGLP FEFLPVADKV GNLDPEKLNV SKREAVAVHW LQHSLYDVTG SDSNTLSLLQ  660
RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA CYGEESEERH VVEQQLLSKE  720
IRNVLAVGGP SRSGEVKFNN WREKLQQSGF RSISLAGNAA AQATLLLGMF PSHGYTLVED  780
NGTLKLGWKD LCLFTASAWR PNSFHTSPAS RHFSRPNMD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein