PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT26058

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 190aa MW: 21744.4 Da PI: 9.5185

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26058	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.3	3e-11	21	62	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ ++k+ +v +s+ ++ + K A LS+LC++++a+iifs OIT26058 21 KFLKDKRAEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSI 62 57789999********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MSCCVIMARM TSQMKSKFEK KFLKDKRAEK VALSNKQKAL SKRAMDLSTL CGIDIAIIIF 60 SITVEPFLFG NPNVESVVER FSQANQPFYR MTSRKMAHEK VGGCEENDIM KKKKMKAINE 120 EDKGESTLEI FKPTNLERLE KLKQEIDELE RNLTEKIDEL QSKIGVTNPK FVPEMNATKS 180 LAMPSNWLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-13	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT26058