PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT25611

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 362aa MW: 40406.3 Da PI: 7.1798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT25611	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	194	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIT25611 194 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 241 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MAAFSYQLQH TNPFLLDSVF LPSSPIKMSG FLEEPNNSIV QNCFTQFYQP ESFQQLPTAN 60 VIGHESSYCL DQSTNVTLSQ NELNSVTNNS SSSVSLDMDS SSVTDKIESG NKPNFIPMDK 120 KRKSREGSSS MSSAHSKNVK QVDNGKKKKN YSQLVAKEEK KGKDENKKEE KKANEEAPTG 180 YIHVRARRGQ ATDSHSLAER VRREKISERM KILQSLVPGC DKVTGKALML DEIINYVQSL 240 QNQVEFLSMK LASSNPMYYD FGMDLDTLMI RPDQSLSGLG TQLPNMQQAS PTNITSQAAE 300 VIPNINNSGY PFMDNSALLM FQQAHFPNSI SQGNGQLLWG ADDQRQKFIN QPGLSNNFCS 360 FH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MAAFSYQLQH TNPFLLDSVF LPSSPIKMSG FLEEPNNSIV QNCFTQFYQP ESFQQLPTAN  60
VIGHESSYCL DQSTNVTLSQ NELNSVTNNS SSSVSLDMDS SSVTDKIESG NKPNFIPMDK  120
KRKSREGSSS MSSAHSKNVK QVDNGKKKKN YSQLVAKEEK KGKDENKKEE KKANEEAPTG  180
YIHVRARRGQ ATDSHSLAER VRREKISERM KILQSLVPGC DKVTGKALML DEIINYVQSL  240
QNQVEFLSMK LASSNPMYYD FGMDLDTLMI RPDQSLSGLG TQLPNMQQAS PTNITSQAAE  300
VIPNINNSGY PFMDNSALLM FQQAHFPNSI SQGNGQLLWG ADDQRQKFIN QPGLSNNFCS  360
FH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	149	KKRKSREGSSSMSSAHSKNVKQVDNGKKKK
2	146	172	KKKKNYSQLVAKEEKKGKDENKKEEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT25611