PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25520
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 336aa    MW: 38116.2 Da    PI: 5.2002
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25520genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.94.6e-15127206191
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
               +fY+e+A+  GF ++k++s+k+   +++   ++ C ++ k+++++          +++r +C+a+++  +e++g w+v+k++++HnH+l p
  OIT25520 127 DFYKEHARLSGFCIVKRTSNKK-GGDTVRYVQYGCDRSRKPRNKH----------VTKRKNCRARINGILEENGSWRVSKVVKKHNHQLEP 206
               6****************99998.5566999******998887765..........5599*****************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MNTNRETSLD PLNPNNSLET RSDQLRNALH ISLGLNSDDS LMNEDESIDI DSDGNFNDGE  60
NPVDDAAAAA ADDDDDNDDD DDYDGHYLEE EGEVGEDRKM PNEFNEEDLI IGPITGMRFS  120
SKDVLFDFYK EHARLSGFCI VKRTSNKKGG DTVRYVQYGC DRSRKPRNKH VTKRKNCRAR  180
INGILEENGS WRVSKVVKKH NHQLEPALSR LMAGHRSLSK SFKTTLAAKD IAGLRPSKNI  240
RVAEVLAGGP ENLGCTPKDC RNYILKSRKL QLQEGDAQSL LKFFSDMQQK DREFYYSVDV  300
DSFGRLRNVV WVHSHSKVAY EEFHDVICLD TTYLVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-27FAR1 family protein