PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25506
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 751aa    MW: 85089.5 Da    PI: 5.3538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25506genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.24.5e-1123787491374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++l+++cA+av+++d + a +lL+++++++ p gd +qRla++f+ +L+arla+++s++ykal +++ts    ++ l+a++l+   +P+ k+s ++ N++
  OIT25506 378 LRTLMINCAQAVAADDSKSAYELLKQIRQHSYPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVSKRTS---AADLLKAYHLYLASCPFRKISSFASNKT 475
               57899************************************************************99999...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I+  +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++ee g+rLa++A++++vpfe+++ +ak++e++++++L+++++E
  OIT25506 476 IMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEESGRRLADYARSFNVPFEYHA-IAKKWETITVDDLKLDKDE 575
               ***************************************************9*****************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                laV + ++ ++l+de+v  +s r+ vL+l+++++P+++++   +  ++++ F++rf eal ++salfd+le+ +pre  er  +Ere++gre+ nv+ace
  OIT25506 576 FLAVTCLYRFKNLYDETVVADSSRTVVLNLIRKINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERGLIEREIFGREALNVIACE 676
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g er+er et+++W+ r+  a F+++p++ + +++a   +r  + + + ++e+s++l+lgWk+r+++++S+W+
  OIT25506 677 GWERVERPETYKQWQVRILGAWFTQIPFEREFVNKAVEKVRLGYHRDFVIDEDSQWLLLGWKGRTIYAISCWK 749
               ******************************************99999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MDPRFNGNPS SLNDFRLVNQ SLPISSDGKM INGPRFELIY PDQKLHNGPR LENSFNLHNF  60
GGVGYINGDR LPSNLESRSD LGVEDDLNED IDFSDAVLSY INQMLMEEEM EDKTDMLQES  120
LELQAKEKTF YEALGKKYPP SPEQNAFTNQ YNESPDDYFS GSIYNSTSNT SENSGNLVDS  180
RAVNISMDYN SAYVEGLSFH NTSVCSSNSG NTIVDGFLDS PVSSLHIPDI YNESQSIWSF  240
RKGVEEASKF LPTNNKLLNN DLPSLESKGE AGYVEKNDEG ETSPTEARGR KNPQRDDNYT  300
EDERSSKQAA VFTESTLRSE EFDIVLLHSM GKGEEALEAY RQNLRNAKSK ATVQIPKGSK  360
GGKGRGKKQG GKKEVIDLRT LMINCAQAVA ADDSKSAYEL LKQIRQHSYP FGDGNQRLAH  420
CFADGLEARL AGTGSQIYKA LVSKRTSAAD LLKAYHLYLA SCPFRKISSF ASNKTIMIKA  480
ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG IEFPQPGFRP AERIEESGRR  540
LADYARSFNV PFEYHAIAKK WETITVDDLK LDKDEFLAVT CLYRFKNLYD ETVVADSSRT  600
VVLNLIRKIN PDIFIHGIVN GAYSAPFFVT RFREALFHFS ALFDMLETIV PREIPERGLI  660
EREIFGREAL NVIACEGWER VERPETYKQW QVRILGAWFT QIPFEREFVN KAVEKVRLGY  720
HRDFVIDEDS QWLLLGWKGR TIYAISCWKP V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein