PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT24475
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 316aa    MW: 34278.6 Da    PI: 5.374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT24475genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16140186455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  OIT24475 140 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 186
               6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MADPYRTNPH PHASSSPLES EDMSSFFLNF LQNSSASTSA AAAGFYHRSA PETAADSSSN  60
LNFSDPGRFY AAEFKEGVEN VFASAGLGDC DAMDSANRRE FLEDDKVDNF GFSSEECDGL  120
DMPANQNHSR SSKRSRSAEV HNLSEKRRRS RINEKLKALQ TLIPNSNKTD KASMLDEAIE  180
YLKQLQLQVQ MLTLRNGLSL YPGYVPGSLQ SVQLPSGNEF DGRSFMLSAN GGATLPGNRE  240
VPQTAFAISN QNLSGKPTIT SNNAENSLAL ETTIQNHYGL LNHLASSKDI CRGDTLSRLH  300
LDMSCSGNNS SSGVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-37bHLH family protein