PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT24363
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 345aa    MW: 38745.6 Da    PI: 6.8804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT24363genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS198.63.8e-619134474312
      GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                ++   ++ +f +++P+l f++ + N+ + +a+++++ +Hi+ ++ +    W+++l+   + p+g+p+l+iT v++    +k +lee+++r++k A++l++
  OIT24363  91 IVDLERSRIIFAKAFPYLGFAYAVINRVLIQAMSEDRIIHIVELGSGDTKLWIPFLKNVVNLPNGTPNLKITCVNN----NKAMLEEMASRIKKEAKALDI 187
               4455556667******************************************************************....9******************** PP

      GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
               +f+fn l   +l +l+l++L+vk gE+la  ++l+lh ll                 +++v+  ++ +++L +++slsPkv+++veqeadhn +++++rf+
  OIT24363 188 SFQFNSL-NVNLRELTLDMLKVKAGESLAFVSILNLHVLLaeddrinsqfalnknnnNNNVKDCKRMSKFLTMLNSLSPKVLILVEQEADHNLSKLVDRFV 287
               ******5.889*******************************************98877777777999********************************* PP

      GRAS 259 ealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetl 312
               e l+yysalfds+++++   +    eer+ vE++ lg+ei+n+vaceg er+ rhe++
  OIT24363 288 EGLHYYSALFDSIDTTFKGSNyllcEERVAVEQM-LGKEIENMVACEGLEREVRHERF 344
               *****************99999************.*********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MTNENQTNGS VAGTGATVTS AAASSSRSTP AHAMAPAEKP EKFSGIAFKH WQTKMLFYLT  60
TLSLQRFIKE DPPVMAENTP DDERLVVPSR IVDLERSRII FAKAFPYLGF AYAVINRVLI  120
QAMSEDRIIH IVELGSGDTK LWIPFLKNVV NLPNGTPNLK ITCVNNNKAM LEEMASRIKK  180
EAKALDISFQ FNSLNVNLRE LTLDMLKVKA GESLAFVSIL NLHVLLAEDD RINSQFALNK  240
NNNNNNVKDC KRMSKFLTML NSLSPKVLIL VEQEADHNLS KLVDRFVEGL HYYSALFDSI  300
DTTFKGSNYL LCEERVAVEQ MLGKEIENMV ACEGLEREVR HERFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-50GRAS family protein