PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24348

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 996aa MW: 111519 Da PI: 7.1362

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24348	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.7	3.4e-09	222	282	21	82
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf OIT24348 222 QGRGKTRADKDREVADFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 282 45788999999**************************************974444.355666 PP

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence
MDEKKGEITK KQPQQHLSNS PDDSNQDSPD NTIPQQQQPQ TVISGAPYIS SSLYNIPGGA 60 ATTSVSFEQQ QQQQQFEVVN PKRPRYTASQ WKFVSSSSQQ QQQKPASQVN ILSTESSPIS 120 PSPQAAATNP QTQAASSSDT TSSPSHSPRP SASGQETSKG EAGEQVHQQH QQFRKGKYVS 180 PVWKPNEMLW LARAWKIQYQ GGSSELHVEG SQEMSTGAGV QQGRGKTRAD KDREVADFLN 240 RHGVNRDAKT AGTKWDNMLG EFRKVYEWER GAEREQGSKS YFRLSPYERK MNRLPASFDE 300 EVFEELSQFM GPRMRSPQTR GGVGVGVGVG SQANIIVSLS DTATRSLPPP PPFREDDLPL 360 SAREKQLAIP ISGTEALLHG TRGGFLGYDT TTTSLDIGGP SSSTSSKELR RIGKIRMIWE 420 ESVSLWAEEG EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TMEAFEDGPM KGFSVDRFLS 480 GVQLKVFGRR KSSSAPAPSG TNERLQFPSS EFPIRSATPW EFQDPTEYYV GCLRSPPPTL 540 PSLFELSWHL QQAPPEELRF PLRRDVFKDL PQGKELFFTT STELLDCRGI TYEVLSSIMR 600 PNPSLSTATD RDSYIGLWDD CINRIISKFC SIEMVFVRKS NSSFSLADTV QDQWPNVTAF 660 LRNFCLWRGE ETGQLSEGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFIV TFCALSRSQD 720 RIIRTDLYTV DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER 780 VDLGNGNYVE MTPNTVVRYF SSKRKWVAVK EIYDFLDHRI PHAEFVFRAS EKDLALVFKP 840 RGCKFKPANC DQLIEALKQI TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFITGFDEA 900 VSSPQLYPYG GAAAAATASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ 960 TRCLDQNPEQ RPTAADCYRH LLQLQSSMSA AAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence

MDEKKGEITK KQPQQHLSNS PDDSNQDSPD NTIPQQQQPQ TVISGAPYIS SSLYNIPGGA  60
ATTSVSFEQQ QQQQQFEVVN PKRPRYTASQ WKFVSSSSQQ QQQKPASQVN ILSTESSPIS  120
PSPQAAATNP QTQAASSSDT TSSPSHSPRP SASGQETSKG EAGEQVHQQH QQFRKGKYVS  180
PVWKPNEMLW LARAWKIQYQ GGSSELHVEG SQEMSTGAGV QQGRGKTRAD KDREVADFLN  240
RHGVNRDAKT AGTKWDNMLG EFRKVYEWER GAEREQGSKS YFRLSPYERK MNRLPASFDE  300
EVFEELSQFM GPRMRSPQTR GGVGVGVGVG SQANIIVSLS DTATRSLPPP PPFREDDLPL  360
SAREKQLAIP ISGTEALLHG TRGGFLGYDT TTTSLDIGGP SSSTSSKELR RIGKIRMIWE  420
ESVSLWAEEG EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TMEAFEDGPM KGFSVDRFLS  480
GVQLKVFGRR KSSSAPAPSG TNERLQFPSS EFPIRSATPW EFQDPTEYYV GCLRSPPPTL  540
PSLFELSWHL QQAPPEELRF PLRRDVFKDL PQGKELFFTT STELLDCRGI TYEVLSSIMR  600
PNPSLSTATD RDSYIGLWDD CINRIISKFC SIEMVFVRKS NSSFSLADTV QDQWPNVTAF  660
LRNFCLWRGE ETGQLSEGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFIV TFCALSRSQD  720
RIIRTDLYTV DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER  780
VDLGNGNYVE MTPNTVVRYF SSKRKWVAVK EIYDFLDHRI PHAEFVFRAS EKDLALVFKP  840
RGCKFKPANC DQLIEALKQI TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFITGFDEA  900
VSSPQLYPYG GAAAAATASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ  960
TRCLDQNPEQ RPTAADCYRH LLQLQSSMSA AAAGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT24348