PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT23927

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 510aa MW: 56718.7 Da PI: 6.1126

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.7	6.3e-20	316	361	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dA+++Lgv T+LKriCR yGI RWP+ k OIT23927 316 YGITLEVLKQHFGKKLTDASNSLGVARTTLKRICRDYGIYRWPRVK 361 579****************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MANPNNVELE AAKFMHKLIQ ESKDEPTKLA TKLYVILQYM RSCGKEDSMP FKVIASAVET 60 LVKQHGLDIE ALTSSRLPMT VGAQVGEVAP SQVAGSFQRV EVTRDMTVNF LGNENMTVNF 120 LGNEMVKADV YASNGAVSGS SGSGHGIYRA SGTHISGHAR SATEATQDKG DAMQSGILFD 180 IPNPFEIGQF LQPAAVATLD IEDTMQHATF FDVHDLFEFG QPLSATHDKR DANLEDSNQT 240 TTTGIADNRR HSPTLDDDVA RSLPGLELGI GTQIVQLGSE HHQVDDVEVD ARDLQRNVVH 300 ADLEKQNNTK RIKREYGITL EVLKQHFGKK LTDASNSLGV ARTTLKRICR DYGIYRWPRV 360 KSRKHNCSLS QAELQQVVDR QPSDSGVRHQ QYVDFSPTSG PKSATNSKEL HVTMQSENFI 420 SVKVTYGNQT VRFPLSFSSG KRDLEEEVEK RIKLVGNSLI RYEDEEKDLI LITCDSDLHY 480 AMHTLRSLGR TIIKMLVEIE PDYNHIIDSC

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MANPNNVELE AAKFMHKLIQ ESKDEPTKLA TKLYVILQYM RSCGKEDSMP FKVIASAVET  60
LVKQHGLDIE ALTSSRLPMT VGAQVGEVAP SQVAGSFQRV EVTRDMTVNF LGNENMTVNF  120
LGNEMVKADV YASNGAVSGS SGSGHGIYRA SGTHISGHAR SATEATQDKG DAMQSGILFD  180
IPNPFEIGQF LQPAAVATLD IEDTMQHATF FDVHDLFEFG QPLSATHDKR DANLEDSNQT  240
TTTGIADNRR HSPTLDDDVA RSLPGLELGI GTQIVQLGSE HHQVDDVEVD ARDLQRNVVH  300
ADLEKQNNTK RIKREYGITL EVLKQHFGKK LTDASNSLGV ARTTLKRICR DYGIYRWPRV  360
KSRKHNCSLS QAELQQVVDR QPSDSGVRHQ QYVDFSPTSG PKSATNSKEL HVTMQSENFI  420
SVKVTYGNQT VRFPLSFSSG KRDLEEEVEK RIKLVGNSLI RYEDEEKDLI LITCDSDLHY  480
AMHTLRSLGR TIIKMLVEIE PDYNHIIDSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	3e-21	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OIT23927