PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OIT23241

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 821aa MW: 91058.1 Da PI: 6.6111

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23241	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	85	127	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + OIT23241 85 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 127 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MQMEPQVSLE CDRCLHPETL MCKDGVSDDT QHPAAAQPVI TSEDHPASQL PVLIHDHAVT 60 QQVSLSQDQV MLQKPAKRQT RQWAAWTRQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV 120 RHYYYRLVRR MNKLLGPELS LDAKNSKDTN AAMLRWWSLL EKSSCKASKL HLKPRRFKIF 180 IETLESQLLK DRKKNVRRRP SQGESSSTAA ASLSSLSRVS TNDSRTVKVV LLDNQDVQKF 240 GSGKGSSLKR HVTMGVNRSN TKVDSFPVKN ARHRRKIGSV STAAYKRWEK AAIAGVSLVA 300 DAAEHLERAT IDKDVGLVQN SQGINGFEHV GKDVPSLPTL SQNLLNETKL QSCMKLKLQL 360 FPVDEGTRRA LEMDNHNPYL ELTLSNRKKM SSILEHLNRK WGSSSIATGE LVLFPYHVQM 420 ENLVQSLRWT KDTTLSAADV YNLIGSPPVF RLRYSWFPNS ELGTFQAPLS STTSFTQNTN 480 TNITEEKNEE VLASSHGKLV RFSKEPLVSN PRMTVTSSST ELSGESNLQA TMGVNTYNSD 540 DNETLPMHRR ENGAITTEKQ VEMHDMQGSK NSALSAGDWE DSLTNISVGD LLSDAPDDEE 600 TDCIESTLPG SSHFLQQMPF SCDSFDAAIA AHIYKHQSKA ESQMALPPQA SSIWNAEDTC 660 DAFAFQKDVA FRRKAHNSSS NVGAENCQHI SQSSSLLLDA GVKDLPGKME PLTDEPAHED 720 PVDECHAQAL GGSTKDLSGL SDIYWPDSLG PLELDAPSCR YHSEDLILSD NSLGGLNRLI 780 ASSLDAFQNC SFFGLDKKEP GSTVEAVETT SLADYKIGAK V

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MQMEPQVSLE CDRCLHPETL MCKDGVSDDT QHPAAAQPVI TSEDHPASQL PVLIHDHAVT  60
QQVSLSQDQV MLQKPAKRQT RQWAAWTRQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV  120
RHYYYRLVRR MNKLLGPELS LDAKNSKDTN AAMLRWWSLL EKSSCKASKL HLKPRRFKIF  180
IETLESQLLK DRKKNVRRRP SQGESSSTAA ASLSSLSRVS TNDSRTVKVV LLDNQDVQKF  240
GSGKGSSLKR HVTMGVNRSN TKVDSFPVKN ARHRRKIGSV STAAYKRWEK AAIAGVSLVA  300
DAAEHLERAT IDKDVGLVQN SQGINGFEHV GKDVPSLPTL SQNLLNETKL QSCMKLKLQL  360
FPVDEGTRRA LEMDNHNPYL ELTLSNRKKM SSILEHLNRK WGSSSIATGE LVLFPYHVQM  420
ENLVQSLRWT KDTTLSAADV YNLIGSPPVF RLRYSWFPNS ELGTFQAPLS STTSFTQNTN  480
TNITEEKNEE VLASSHGKLV RFSKEPLVSN PRMTVTSSST ELSGESNLQA TMGVNTYNSD  540
DNETLPMHRR ENGAITTEKQ VEMHDMQGSK NSALSAGDWE DSLTNISVGD LLSDAPDDEE  600
TDCIESTLPG SSHFLQQMPF SCDSFDAAIA AHIYKHQSKA ESQMALPPQA SSIWNAEDTC  660
DAFAFQKDVA FRRKAHNSSS NVGAENCQHI SQSSSLLLDA GVKDLPGKME PLTDEPAHED  720
PVDECHAQAL GGSTKDLSGL SDIYWPDSLG PLELDAPSCR YHSEDLILSD NSLGGLNRLI  780
ASSLDAFQNC SFFGLDKKEP GSTVEAVETT SLADYKIGAK V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT23241