PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT23050
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 279aa    MW: 30689.3 Da    PI: 6.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT23050genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08170217455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  OIT23050 170 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 217
               8*************************8....355888888888888888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGDHSAADHF QALNSSSSSS LMNSNNMELL NSISLETENF SSNINQHGFL ALSNEDFSNH  60
HQLPNMAFHT DMNISNSISA QNIYDPAAAA AAAQFFTLGG PSNYGCSSNM NSIPESESIL  120
NNHIPTPPPL LSGTAKNCEG RKRKRNNQKE AEKPREVVHV RAKRGQATDS HSLAERLRRE  180
KINEKLRCLQ ELVPGCYKTM GMAVMLDVII NYVRSLQNQI DFLSMKLSAA SLFYDFNSSE  240
MDDIDSMQGT NGYAAQGMGK IVGEGYGGFP PQFQTSWPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-60bHLH family protein