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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT23016 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 281aa MW: 31289.9 Da PI: 4.9871 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.8 | 1.4e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r
OIT23016 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQNFNVFDFLKDVVSR 86
5789**************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 281 aa Download sequence |
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK 60 TMNSFHLKQC IQNFNVFDFL KDVVSRVPDL GGSDGGAESA TKRRKVVEED DHDIDDDIKR 120 SSRMHETAHT SSSGRGRGRG RGRGRGRGAR AVERGDSNVH CDKLEDAADV SNQNNEKQKQ 180 NGERMDYVAE PADSKNISAG KCPEVPARNF DLNIDLNECV ESTAIPAEAP STSKMAPPEM 240 KHEEIPGWSL SEMEKMAIDP IQLANLNRGL DEEEEDYDEE G |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 135 | 144 | RGRGRGRGRG |
| 2 | 135 | 145 | RGRGRGRGRGR |
| 3 | 137 | 146 | RGRGRGRGRG |
| 4 | 137 | 147 | RGRGRGRGRGR |
| 5 | 139 | 148 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G19490.1 | 7e-60 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT23016 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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