PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22786

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 598aa MW: 69679.5 Da PI: 8.171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22786	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.5	3.7e-12	91	169	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+e+A+ GFsv+k++s+k+ ++ t++C + r+++ ++ + +C+ +l ++++g w+v+k +++HnH+l p OIT22786 91 FYKEHARLNGFSVVKRNSNKKGSDT-SRYITYCCDRARIRKTKFST----------KSNNCNSRLAAVLDDSGCWRVSKGVHDHNHDLLP 169 9**************99985555.8889***999987666..........7789*************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MDSNQENLAV QQNMNPNEHN TNTTTMNINQ IIEPDGEYHG EANDDEEQVL GNELELCDVD 60 REMANEFTEE DVVVGPISEM RFRDKDSLFA FYKEHARLNG FSVVKRNSNK KGSDTSRYIT 120 YCCDRARIRK TKFSTKSNNC NSRLAAVLDD SGCWRVSKGV HDHNHDLLPS MSRLMAGHRS 180 VCDSLKRNLV AHDRSSIRPS KNIRLAEVQR GGPQNLGYTP KDCRNFILKS RNFEMQEGNA 240 QLLLNFFREM QVKDREFFYS IDVDYIGRQR NVKKWVPVYL DVYFWAGMLS TQRSEGMHAF 300 FDGYITRQST LRMFVHQYEL AIGAKHEKEL EAEYRSKGFQ IVCESIFKWE EQAIQCYTHT 360 VYEFFKTQLR KLYQCEVSSP DDHQVVHGVE KFIVSDYSIF KKNARNPVEY TVAYIPIGDY 420 FSYSCKWFES RGILCCHILK ILPHKKIDKI DERYILTRWR RDAIRPHLNR FHQIGYPNMT 480 PEYKTYRSML KHFDMACDIA LGTSVKVQYV KHNLKKMVHD LQNWDDKMIV PNLDQDDSDE 540 TEGTTLRDPH YTNSHGRTCL NRYRGRIEYY FTSSQPRGVF GASNGARTGV RGGGRGGG

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MDSNQENLAV QQNMNPNEHN TNTTTMNINQ IIEPDGEYHG EANDDEEQVL GNELELCDVD  60
REMANEFTEE DVVVGPISEM RFRDKDSLFA FYKEHARLNG FSVVKRNSNK KGSDTSRYIT  120
YCCDRARIRK TKFSTKSNNC NSRLAAVLDD SGCWRVSKGV HDHNHDLLPS MSRLMAGHRS  180
VCDSLKRNLV AHDRSSIRPS KNIRLAEVQR GGPQNLGYTP KDCRNFILKS RNFEMQEGNA  240
QLLLNFFREM QVKDREFFYS IDVDYIGRQR NVKKWVPVYL DVYFWAGMLS TQRSEGMHAF  300
FDGYITRQST LRMFVHQYEL AIGAKHEKEL EAEYRSKGFQ IVCESIFKWE EQAIQCYTHT  360
VYEFFKTQLR KLYQCEVSSP DDHQVVHGVE KFIVSDYSIF KKNARNPVEY TVAYIPIGDY  420
FSYSCKWFES RGILCCHILK ILPHKKIDKI DERYILTRWR RDAIRPHLNR FHQIGYPNMT  480
PEYKTYRSML KHFDMACDIA LGTSVKVQYV KHNLKKMVHD LQNWDDKMIV PNLDQDDSDE  540
TEGTTLRDPH YTNSHGRTCL NRYRGRIEYY FTSSQPRGVF GASNGARTGV RGGGRGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-24	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT22786