PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22564
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 369aa    MW: 42160.1 Da    PI: 4.6173
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22564genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-15135219286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               W+++e+  L+ea  ++  r +r++l+   W+ev++k+ +  ++er+ +qC+++++ l+k+ykk+k    ++ s++ s+++yf++++
  OIT22564 135 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAENGSNA-SKWVYFKKMD 219
               *************************************555689**********************9999975555.59*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MDDNEDNGRY PPSPYGMNQG YGSSNRQKLP ARDTSYSRHV DDQYVEEADN DEDVDDEEEE  60
EEDDDDENGV QRIGKDVFED DDDDDYGDSQ RHQKKRKLKS LLSSYEFAPR VPPPSIAVAT  120
APKPSFGGRN PLSDWSEHET FILLEAWGDR FVRHGRKSLR SDEWQEVAEK VSQGSKLERT  180
DTQCRNRLDT LKKKYKKEKM KFAENGSNAS KWVYFKKMDM LLTSTPLQAG ISCGVDSGEY  240
VFMSPKVYLN RANGLDEMRD SPANSGSADG DDDDSEDLPP KRSRNGQPGR SGASFKLIAD  300
SIHKFSEIYV KIENSKRQQM LELEKMRMDF HRDLEMQKRQ IVERAHAEIA RIRQGSDEDN  360
DISAENVSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-67Trihelix family protein