PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT22458

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 465aa MW: 52947.4 Da PI: 9.8746

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22458	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27.6	6.3e-09	361	449	11	99
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 +++++ + ++P ri++i+k ++ ++s ea ++ ka e f le+ r + +r+ + ++++v++ + fdfl d vp++ OIT22458 361 DEKSESALYQFPHNRIHRIIKDENSDMRMSQEATFVVNKATEKF-LEVFCREAYACSFLDRNNyVGYDHLSSVVSKRHRFDFLSDFVPQK 449 4555666789*********99988889**********9.68888877777766666516677799**************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MPKAKRSNGK SNKNDGDEPE VFVVPSSSTE SQQDEKEEEE ENDGVENVHE EYVRDTDEEE 60 EEKAAEGKVG NNTNRRGRNE ELEVQKKVYR RKGKKGDESR ENEAKKAKQS ESENLKIYMR 120 KKKVKNGKEK EEEEQNVAKT AKREKDNTEK KMKEKNEKGR IGKNAKSNGD STRGGKIENK 180 KKKNEEEGGQ KVAKKMKSNG DSSRAGENEN KKKKREEEGG QKVAKKAKSN GDSSRGSENE 240 KEESKKKKKR AEEGERGEGK AAKKAKSNGD SSRSKKEEKK MKKTENKKEG DEEAEEKGVK 300 RAKGNGSTSR ATKEKMKREK EENEGKTSNG KVENGARSNG DTPLKKLKAK KKREDDEEEE 360 DEKSESALYQ FPHNRIHRII KDENSDMRMS QEATFVVNKA TEKFLEVFCR EAYACSFLDR 420 NNYVGYDHLS SVVSKRHRFD FLSDFVPQKV RAVDALAEIP KAEET

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MPKAKRSNGK SNKNDGDEPE VFVVPSSSTE SQQDEKEEEE ENDGVENVHE EYVRDTDEEE  60
EEKAAEGKVG NNTNRRGRNE ELEVQKKVYR RKGKKGDESR ENEAKKAKQS ESENLKIYMR  120
KKKVKNGKEK EEEEQNVAKT AKREKDNTEK KMKEKNEKGR IGKNAKSNGD STRGGKIENK  180
KKKNEEEGGQ KVAKKMKSNG DSSRAGENEN KKKKREEEGG QKVAKKAKSN GDSSRGSENE  240
KEESKKKKKR AEEGERGEGK AAKKAKSNGD SSRSKKEEKK MKKTENKKEG DEEAEEKGVK  300
RAKGNGSTSR ATKEKMKREK EENEGKTSNG KVENGARSNG DTPLKKLKAK KKREDDEEEE  360
DEKSESALYQ FPHNRIHRII KDENSDMRMS QEATFVVNKA TEKFLEVFCR EAYACSFLDR  420
NNYVGYDHLS SVVSKRHRFD FLSDFVPQKV RAVDALAEIP KAEET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	125	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
2	120	154	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
3	180	214	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
4	211	245	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
5	212	246	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
6	245	279	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
7	246	280	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK
8	247	281	RKGKKGDESRENEAKKAKQSESENLKIYMRKKKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	5e-25	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OIT22458