PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22423
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 565aa    MW: 63301.3 Da    PI: 4.741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22423genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.95.4e-1361975653374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               + L++cA a+++g+ e+a++++++l++++s +g+p++R aay++eALaar+a s+ +lykal+++e+     se+l+a+++++ev+P+++f++++aN aIl
  OIT22423 197 QMLFSCAAAIQDGNIEQASSMINELRQMVSIQGEPLERTAAYMVEALAARMATSGRGLYKALKCKEAL---FSERLSAMQVLFEVCPYFRFGFMAANGAIL 294
               79*****************************************************************8...9***************************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               ea++ e+rvHiiDfdi+qG Q+ +L+q+Las p++pp+lR+Tgv++pes+      l+ +g rL+++A+ +++pfef++ va++++ +++ +L+++pgEal
  OIT22423 295 EAFKDEKRVHIIDFDINQGSQYYTLMQTLASMPGKPPHLRLTGVDDPESVqrAIGGLNVIGLRLEELAKDFKIPFEFQA-VASNTALVTPAMLNCHPGEAL 394
               ************************************************99777789***********************.7******************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               +Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+r++e  +yysa+f+sl+a+l+r+s+er++vEr++l+r+i n+vaceg+
  OIT22423 395 IVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTTPFLQRVAEVYNYYSAVFESLDATLSRDSQERVNVERQCLARDIINIVACEGE 495
               ***************************************************************************************************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               er+er e ++kWr+r+++aG++p p+s +++++++ l+++++++ y+ +ee g+l +gW+d++L+++SaW+
  OIT22423 496 ERIERYEVAGKWRARMMMAGLTPSPISRNVYDSIQNLIKQYSER-YKAKEEAGALHFGWEDKSLIVASAWK 565
               ******************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    
MSLVRSVRTI GNGKLYFPND HNDNSGLSTS MFTKNARGIM YATESSSTDS YDPKYLLDSP  60
SPSEELLNTS ASEVSGNPFH QRHSSSFQPS RDYDACQLSY DCEDIVSQRP DSLQYNDGRV  120
TLKLQELERV LFDDNDVDGD DVFARGQCMD IDDEWFSQIG TVLLHDSPKE STSADSNISS  180
SSSYKEISVT APQTPKQMLF SCAAAIQDGN IEQASSMINE LRQMVSIQGE PLERTAAYMV  240
EALAARMATS GRGLYKALKC KEALFSERLS AMQVLFEVCP YFRFGFMAAN GAILEAFKDE  300
KRVHIIDFDI NQGSQYYTLM QTLASMPGKP PHLRLTGVDD PESVQRAIGG LNVIGLRLEE  360
LAKDFKIPFE FQAVASNTAL VTPAMLNCHP GEALIVNFAF QLHHMPDESV STVNQRDQLL  420
RMVKSLNPKL VTVVEQDMNT NTTPFLQRVA EVYNYYSAVF ESLDATLSRD SQERVNVERQ  480
CLARDIINIV ACEGEERIER YEVAGKWRAR MMMAGLTPSP ISRNVYDSIQ NLIKQYSERY  540
KAKEEAGALH FGWEDKSLIV ASAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein