PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT22376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14284.3 Da PI: 9.2934 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51 | 1.8e-16 | 11 | 59 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklye 48 k+i +s r vtfskRr+g++KKA EL S +++vav++fs+tgk y+ OIT22376 11 KKITKESSRMVTFSKRRKGLFKKAVELeSKTSGVQVAVLVFSPTGKPYT 59 678999*********************89999*************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MGTGKKKIEI KKITKESSRM VTFSKRRKGL FKKAVELESK TSGVQVAVLV FSPTGKPYTC 60 GGNDVLTTFQ NHCDSSHSSE SATNGMWDSK FNVETCHDVN ELLMFKAHLE STREKLAESQ 120 FFESLWL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47760.1 | 5e-13 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT22376 |