PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22246
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 326aa    MW: 36822 Da    PI: 4.6522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22246genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-062212591154
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  OIT22246 221 VRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 259
               5778999**********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MADEYFQAGV CGENSWWNST KNIFGLSPNF ASSIFDDPIG NLIAWPISDL LDMKTKVDLS  60
SPSSTLDWNH TANDKLDNTY PSMLQEDINS SLNYQQENGL DCPNKLKRNF SSITQDSSTN  120
SKPMNQDFTY YSDLLQTLFD TDPDQPPQQS FLTNNQPINC TSNKRQNLND FAPSLPNSSE  180
IRASLPHITS KSNIEEIRES TSSSYKRPRI ETPSPLPTFK VRKEKMGDRI TALQQLVSPF  240
GKTDTASVLQ EAIEYIKFLH DQVNVLSNPY MKKESSTQYQ QVKEQEGLKQ DLRSQGLCLV  300
PISSTFPVTA ETTMDFWTPT FGATFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-55bHLH family protein