PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22154
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 727aa    MW: 80188.7 Da    PI: 5.8924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22154genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-2059114156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++eLe++F+++++p+ ++r+eL k+lgL+  q+k+WFqN+R+++k
  OIT22154  59 KKQYHRHTQHQIQELEAFFKECPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 114
               688999***********************************************998 PP
2START2191.5e-682464671206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++e++++a+ +ep+W +ss    e++ ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +a    ka+tlev+s+g
  OIT22154 246 ELAVAAMEEFIRLAETREPLWIQSSensaEILSEEEYARTFPRGVGpkslrLTSEASRESAVVIMNHINLVEILMDVN-QWTSFFAglvsKATTLEVLSTG 345
               57899********************99999***********99777********************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skvtw+ehv++++r + +++r
  OIT22154 346 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTSI---VSRCRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVNSIYR 443
               *****************************************************9775...***************************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +lv+sgla+gak+wvatl+rqce+
  OIT22154 444 PLVNSGLAFGAKRWVATLDRQCER 467
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MFQQNMFDSH NFLLDLSHKT SENEMDLIRD DEFESKSGAD TTELAPSGDD QDPNKRPKKK  60
QYHRHTQHQI QELEAFFKEC PHPDDKQRKE LGKRLGLEPL QIKFWFQNKR TQMKAHQERH  120
ENTQLRNENE KLRAENIRYK EALTTATCPN CGGPATIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLNYAQLP SPIPPTRSLD LGVASFGHQL GEMYNAGDLL RSISGSTDAD  240
KPMIIELAVA AMEEFIRLAE TREPLWIQSS ENSAEILSEE EYARTFPRGV GPKSLRLTSE  300
ASRESAVVIM NHINLVEILM DVNQWTSFFA GLVSKATTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHADGTWAVV DVSLDNLRPT SIVSRCRRRP SGCLIQELPN  420
GYSKVTWIEH VEVDDRAVNS IYRPLVNSGL AFGAKRWVAT LDRQCERLAS VMANNIPTGD  480
VITSPEGRKS MLKLAERMVM SFCAGVGAST AHTWTTLSGS GADDVRVMTR KSIDDPGRPP  540
GIVLSAATSF WLPVPTKRVF DFLRNENSRN EWDILSNGGL VQEMAHIANG RDSGNSVSLL  600
RVNSGNSSQN NMLILQESCT DSTGSYVIYA PVDIAAMNVV LSGGDPDYVA LLPSGFAILP  660
DGSTTTHGVG INPETNAAGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA  720
SIVCESA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein