PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22028
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32481.1 Da    PI: 6.8735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22028genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-103075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTteE +++ da +++ ++   +W  +a++++ g+t ++++  ++ 
         OIT22028 30 KWTTEENKRFEDALALFDKEtpdRWYNVAAMIP-GKTVNDVIKQYRE 75
                     8*****************99*************.********99986 PP
2Myb_DNA-binding45.61.7e-14143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r   ++Rt+ q+ s+ qky
         OIT22028 143 PWTEEEHRQFLLGLKKYGKGDWRNISRNYVTTRTPTQVASHAQKY 187
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MSSEIGFLSP TTTYLRNSNW LFEENKGTTK WTTEENKRFE DALALFDKET PDRWYNVAAM  60
IPGKTVNDVI KQYRELVEDI SDIEAGLIPL PGYTTSTNSF TLEWINHDQE GDFHDLNKRF  120
YGPSGKRNPS TRSSEHERKK GVPWTEEEHR QFLLGLKKYG KGDWRNISRN YVTTRTPTQV  180
ASHAQKYFIR QLSGGKDKRR SSIHDITTVN LTEMKSPSPE NHISSISPHE SAPSPQEQAL  240
YEYNLPNQEA DIAFKTYGLK LHENGMHSVI QQGLQFAQYN TM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-107MYB family protein