PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT21599

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 186aa MW: 21042.8 Da PI: 8.239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21599	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	15	64	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +E++RR++++ ++eL +l+P++ ++s+ ls + Le+A +YIk+Lq OIT21599 15 RKTIEKNRRNQLKALYSELNSLVPHQ--QHSREgLSLPDQLEEAANYIKKLQ 64 6789*******************6..388889***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MEQCNKPSSL SKADRKTIEK NRRNQLKALY SELNSLVPHQ QHSREGLSLP DQLEEAANYI 60 KKLQINLERM RQRKESLTVD ENSSSIRSSS GRKETQPLLP HLEIYHVDSS LDVVLITRMD 120 YQFIFNDIIR MLHEENVEVV SASYTLIGDT IFHSIHSKVG ECATGYGATR ISDRLKKIVG 180 SGSGAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	9e-43	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT21599