PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21460

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 288aa MW: 30945.9 Da PI: 4.8889

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21460	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.1e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e++ C ++ lC +C ++ H H++v+l OIT21460 4 QCNACESAEARVLCCADEAALCWSCDDKVHAAnklaskHQRVSL 47 7*****************************66789999998875 PP
2	zf-B_box	29.8	1.3e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C ++H H OIT21460 53 PMPKCDICQETVGYFFCLEDRALLCRKCDISIHTAnayvsaH 94 689******9*******************555566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MKIQCNACES AEARVLCCAD EAALCWSCDD KVHAANKLAS KHQRVSLSAS SSPMPKCDIC 60 QETVGYFFCL EDRALLCRKC DISIHTANAY VSAHRRFLLT GVKVGLEPIN PAASASSGNS 120 HSVKKAVEKE SPPISSNALC NDLLPVRPSG VEDFAPGILP LVGGATAGII PQWQFDELLG 180 MGDFNQNYGY MECGSSKADD GMVGESDSSP ILRDAEVEGD ECLVEVPETC WDVPRIPSPP 240 TASGLYWPAK NLQNPFDSAV LESVVSCSSM QNFQHQQSNG SGKRRRAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-87	DBB family protein

Link Out ? help Back to Top
Ensembl	OIT21460