PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21383
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 301aa    MW: 32340.1 Da    PI: 8.7153
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21383genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-3648128784
       TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasn 84 
               + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as+     a+ s+s++++
  OIT21383  48 KRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIFAATGTGTIPASALavaAAGPSVSQQGT 128
               579*************************************************************87766433333333332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MDPKQTPAQS NAININNSNN NIMVEYNKPV HDQIKEDETK KQQQLVPKRK DRHTKVEGRG  60
RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLQQAEPSI FAATGTGTIP ASALAVAAAG  120
PSVSQQGTSV SAGLHQKMDE LGGNIVGSAS ICTSSSSSRT SWPMMIGNFG KPHLATTGIW  180
PGPTPVVTSF GLQTALTPGS STNLGSESSN YYLQKIGFPG FDLPAATNMS PMSFTSILGS  240
SNNQQLPGLE LGLSQDRGHI GVLNSQALSQ IYQARIHNQQ QHQQNQHQHL SPEDDSQGSG  300
H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.13e-59TCP family protein