PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21148

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 363aa MW: 40328.6 Da PI: 6.6739

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21148	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl OIT21148 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.4	1.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l OIT21148 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKL 120 EGHDHENNQD GKSSSSSSSQ SKISKGQWER RLQTDIHMAK QALCEALSLD TTPSTGDSPN 180 NNNNSSPNLP VQEPIQTCTT YASSADNIAK LLQNWMKNSP KSSSHSRSTS KMSSFNYPSI 240 GAVSSSSPSE GTINNATIAH EGLDSLFNFN SSNNNSDVSQ SMSVDEGGNF TPENNNAAIF 300 QVESKQNFKA EINGSFHQEE SKPNLETQVP FTFLEKWLLD DNSNAQAQEE LMGMALGETA 360 DLF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKL  120
EGHDHENNQD GKSSSSSSSQ SKISKGQWER RLQTDIHMAK QALCEALSLD TTPSTGDSPN  180
NNNNSSPNLP VQEPIQTCTT YASSADNIAK LLQNWMKNSP KSSSHSRSTS KMSSFNYPSI  240
GAVSSSSPSE GTINNATIAH EGLDSLFNFN SSNNNSDVSQ SMSVDEGGNF TPENNNAAIF  300
QVESKQNFKA EINGSFHQEE SKPNLETQVP FTFLEKWLLD DNSNAQAQEE LMGMALGETA  360
DLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	7e-95	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT21148