PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT21139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28712.7 Da PI: 10.3627 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.6 | 8.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss OIT21139 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 101.8 | 9.2e-34 | 79 | 173 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++ +e+++ e+ kL ++ie +qr++Rh+ G+dLe+Lsl+eLq+Leqq++++lk+iRs+Kn++++e+i+elqkkek+lqe+n++++kkl+ OIT21139 79 KLNANDVDPMENWTVEYPKLMSRIELIQRNIRHYTGQDLEPLSLRELQSLEQQMDTALKRIRSRKNQVMHESISELQKKEKALQEQNNSMTKKLK 173 55556667789*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE 60 SSMESILERY ERYSYAERKL NANDVDPMEN WTVEYPKLMS RIELIQRNIR HYTGQDLEPL 120 SLRELQSLEQ QMDTALKRIR SRKNQVMHES ISELQKKEKA LQEQNNSMTK KLKDKDKKQS 180 GQTQPTSGQN SATFMLPQQP PPQSRQLPNL TIGGPFEATR VRNRDGGQAH YGSNSLMPPW 240 MIRHVNTDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-78 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT21139 |