PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21008
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 759aa    MW: 83429.2 Da    PI: 6.0943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21008genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15e-1023977582374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +++L+++Ae v++g+  laq +Larl+++ sp g+p+ R+a+y +eAL+  l+ ++++l +   ps++ + + + ++ a+k fse+sP+ +f+++t+Nqa+
  OIT21008 397 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHTNTNNLNNPSIPSSS-PFSLIFKIGAYKSFSEISPVAQFANFTCNQAL 496
               689***************************************************88888876655544.467***************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEa 201
               le ++g er+Hi+Dfdi++G QW++L+q+La R++g+p+l+iT+++sp+++++ el  t+e L +fA+e++++fef++l  ++l++   ++L   v+++Ea
  OIT21008 497 LEVLDGFERIHIVDFDIGYGRQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRESLIHFANEINMEFEFEILSIDSLNST-SWSLppLVSENEA 596
               ******************************************************************************977766665.4555334788*** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               +aVnl ++ ++ +  ++sl+     vL++vk+lsP++vv v++ +d+++ +F +++++ l+ ys l++sl+a    + ++ +k+Er+ll+++i+ +v+ + 
  OIT21008 597 IAVNLPISSFSSY--QLSLPL----VLRFVKQLSPRIVVSVDKGCDRTDLPFPNHVIQVLQSYSNLLESLDAV-NVNFDTLQKIERFLLQPRIERIVMGRF 690
               *******999988..566655....*********************************************665.3466999****************9988 PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ++     e+ ++Wr+ + ++G++p+pls+++++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr
  OIT21008 691 RS----PEKTQHWRALFLSSGLSPLPLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 758
               77....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    
MKGMPLPFDF QGKGVLDLDI VLNKNSILNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS  60
SSTLSSSFGG GGGGGGGTAS TDTAGAVSAN PSSKWQQQQQ QQDNTTATSS NVGGAAAESE  120
PQQVAAATEG KKCAMEEWEG GLSESGMASP CQEQSILGWI MGDVDDPSMS NLNKVLQVNG  180
PMEYEFNAGF GVVDQGFGVD QIGSSSFMPA INSSSVSSFH PTTTRMNSDK IGLLSNIPTN  240
LPQNPIFPSF SNNLGPVSFS QTQHQQQQQP FESTDLKPQS FHSQFLINQH QAQIPQNPSF  300
LLPLPFAQQE QNLVLPPKAK RHNPGTLEQQ GSQISQELFI DAGQQQPPPS HQLQLLPHFR  360
PGGPIGTKPK MVGEEMGQFH QLQLQQQQQQ QQQQAIIDQL FKAAELVQTG NPVLAQGILA  420
RLNHQLSPIG KPFYRAAFYC KEALQLLLHT NTNNLNNPSI PSSSPFSLIF KIGAYKSFSE  480
ISPVAQFANF TCNQALLEVL DGFERIHIVD FDIGYGRQWA SLMQELALRS GGAPTLKITA  540
LASPSTHDQL ELGLTRESLI HFANEINMEF EFEILSIDSL NSTSWSLPPL VSENEAIAVN  600
LPISSFSSYQ LSLPLVLRFV KQLSPRIVVS VDKGCDRTDL PFPNHVIQVL QSYSNLLESL  660
DAVNVNFDTL QKIERFLLQP RIERIVMGRF RSPEKTQHWR ALFLSSGLSP LPLSNFTESQ  720
AECVVKRTPV RGFHVEKRQS SLVLCWQRKE LISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-133GRAS family protein