PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20720

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1252aa MW: 136934 Da PI: 4.5314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20720	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	418	439	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F++k++L +H+ +H OIT20720 418 HCDKCNVTFNDKDDLLQHQLSH 439 5******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 1252 aa Download sequence
MASVTIDSSS VTVTVSDGPL HAESIPTVDL RLLSQSELYS LSLCSPSAFN PRRDDDVIVP 60 KIDRSVFNES AGSRKQTYSR LRLAPASSAS SSSSSALRSR TPHLRNSLHN PSSFNNDPEN 120 SQIVSLLKQL FGSGTETNPN PSDLIPIRVD YSDSLSVPVP LTGHVHVPES SNVGSIGQKR 180 KRGRPRKNEN ENENVGVGGG GGGVDKGTDV AIKDIVVYQN VDDNRDRDDK EMLNKDGEPV 240 DLTVLGTLED QFGEELRRRT EGLGSSEELL RFLGRLNGQW GSTRKKRRIV DAGEFGNVLP 300 KGWKLLLSIK RKEGRVWLHC RRYISPSGRQ FETCKEVSSY LLFLHGERNE NLPTYAESSG 360 TVDITNTCAL VSTSDLQDGS NNEGPLFHNS SPAVDHGELQ VLLNFGELSE VQVGDLLHCD 420 KCNVTFNDKD DLLQHQLSHR RRRSRNGQSI TDGVIIKDGK FECQFCRKTF EERRRYNGHV 480 GAHVKNQVKT TDGSVSVSVG EFVEPVASSG AMLRESIMQD SVVSLRNLTE IADVSSDYGR 540 KFAPPGKIQE EDHMEIDDKL EGLGEALNTA PNKTNMCSSS EAITCNNVGN IYCETPCDSL 600 IADVVAEGTN KGCHNQEGDS ESCSPISLNE QTCVNTSKVI DCSIIEEPEQ EGLLCSNGIV 660 DPCGVSVEDG KFSPAVEESK VETDRFVDNE STTALCSNVS VLDENSLTNA KQVPCTEDHS 720 GKNIDVLNRV PFLAETFKEN RGLSSTGTPS CEEEESTVDY VKRAFPGCIG EQKPSNVMCN 780 IKNDECGSLV DSNDNKLIMK ADSCSFVPHP DKHVNTAEKD VSDGSACFLE EPEQQKGDEN 840 SLLSPACDKN GEVEAQLLND SKTSTDEPKV NELQSVGSNI TGFPCNNHAV QKADASEIER 900 EKSLAFCSLF PATNLRASCA EDHDTKVYQS TIEVNDQQRA TNTLFSLTNV PEASTKENTM 960 NRSYNNPLNG SKFDGLENSR HHDLNVVFGN SHVDLDANLN CTTFQLGMEE TYGVQANLLG 1020 RLGSDKQGEV GIDLSDSAFK GKTGDFESNF NTVFHSQLWD EQKVDEVGDC GKKIITGFGC 1080 VDAKPNEDVM AGSIWRTGVE NVMQGDSADN STSVVQSSNC FQTYDVLSDK VQSLFGENEK 1140 YDGNTGFDGL RSDRTGPVEY SFMSTHSLNS LQEEPRALPY DVDIEQGFNS SFWLGKDDLM 1200 PNLAGRNQVM LVCVWCRNEF YQEPNQLGAE AGSIGSMCPT CSGRISGQFS FL

Sequence ? help Back to Top

Protein Sequence Length: 1252 aa Download sequence

MASVTIDSSS VTVTVSDGPL HAESIPTVDL RLLSQSELYS LSLCSPSAFN PRRDDDVIVP  60
KIDRSVFNES AGSRKQTYSR LRLAPASSAS SSSSSALRSR TPHLRNSLHN PSSFNNDPEN  120
SQIVSLLKQL FGSGTETNPN PSDLIPIRVD YSDSLSVPVP LTGHVHVPES SNVGSIGQKR  180
KRGRPRKNEN ENENVGVGGG GGGVDKGTDV AIKDIVVYQN VDDNRDRDDK EMLNKDGEPV  240
DLTVLGTLED QFGEELRRRT EGLGSSEELL RFLGRLNGQW GSTRKKRRIV DAGEFGNVLP  300
KGWKLLLSIK RKEGRVWLHC RRYISPSGRQ FETCKEVSSY LLFLHGERNE NLPTYAESSG  360
TVDITNTCAL VSTSDLQDGS NNEGPLFHNS SPAVDHGELQ VLLNFGELSE VQVGDLLHCD  420
KCNVTFNDKD DLLQHQLSHR RRRSRNGQSI TDGVIIKDGK FECQFCRKTF EERRRYNGHV  480
GAHVKNQVKT TDGSVSVSVG EFVEPVASSG AMLRESIMQD SVVSLRNLTE IADVSSDYGR  540
KFAPPGKIQE EDHMEIDDKL EGLGEALNTA PNKTNMCSSS EAITCNNVGN IYCETPCDSL  600
IADVVAEGTN KGCHNQEGDS ESCSPISLNE QTCVNTSKVI DCSIIEEPEQ EGLLCSNGIV  660
DPCGVSVEDG KFSPAVEESK VETDRFVDNE STTALCSNVS VLDENSLTNA KQVPCTEDHS  720
GKNIDVLNRV PFLAETFKEN RGLSSTGTPS CEEEESTVDY VKRAFPGCIG EQKPSNVMCN  780
IKNDECGSLV DSNDNKLIMK ADSCSFVPHP DKHVNTAEKD VSDGSACFLE EPEQQKGDEN  840
SLLSPACDKN GEVEAQLLND SKTSTDEPKV NELQSVGSNI TGFPCNNHAV QKADASEIER  900
EKSLAFCSLF PATNLRASCA EDHDTKVYQS TIEVNDQQRA TNTLFSLTNV PEASTKENTM  960
NRSYNNPLNG SKFDGLENSR HHDLNVVFGN SHVDLDANLN CTTFQLGMEE TYGVQANLLG  1020
RLGSDKQGEV GIDLSDSAFK GKTGDFESNF NTVFHSQLWD EQKVDEVGDC GKKIITGFGC  1080
VDAKPNEDVM AGSIWRTGVE NVMQGDSADN STSVVQSSNC FQTYDVLSDK VQSLFGENEK  1140
YDGNTGFDGL RSDRTGPVEY SFMSTHSLNS LQEEPRALPY DVDIEQGFNS SFWLGKDDLM  1200
PNLAGRNQVM LVCVWCRNEF YQEPNQLGAE AGSIGSMCPT CSGRISGQFS FL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	312	RKKRRIVDAGEFGNVLPKGWKLLLSIKRK
2	285	313	RKKRRIVDAGEFGNVLPKGWKLLLSIKRK

Link Out ? help Back to Top
Ensembl	OIT20720