PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT20601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 83aa MW: 9383.65 Da PI: 8.3187 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.6 | 4.8e-34 | 14 | 82 | 1 | 69 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa++hk+FGasnv+kll++l++++reda++sl+yeA++r+ OIT20601 14 PCAACKFLRRKCQPECVFAPYFPTDQPQKFAYAHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRL 82 7******************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence |
MASSSSYSLS SYSPCAACKF LRRKCQPECV FAPYFPTDQP QKFAYAHKIF GASNVTKLLN 60 ELQPHQREDA VNSLAYEADM RLQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 2e-43 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT20601 |