PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20600
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 412aa    MW: 46068.9 Da    PI: 7.1962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20600genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07190211223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                C++Cgk F+r  nL+ H+r H
  OIT20600 190 FCTICGKGFKRDANLRMHMRGH 211
               6*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MEHQVNQRND FTRIQDWDPR AMLKNMSFLE QKIHQLQELV RIIVDHRSLV GIQGNDLSIQ  60
QQQLITADLT SIIVQLISTA GSLLPTVKHH TLSSADPTTK QPAQSGGVSV PSGKVINAGS  120
LPHSVNVTKA EDQPNHVDLM GDCGIEQNYA ADEHEAKDED EFHDEENLPP GSYEILQLEK  180
EEILAPHTHF CTICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPHKDPSS GTTTLIKRYS  240
CPCVGCKRNK EHKRFQPLKT ILCVKNHYRR THCEKSYACS RCNLKKFSVI ADLRTHEKHC  300
GKDKWLCSCG TTFSRKDKLF GHVSLFQGHT PAIPLDETKG FAETSDQGHT GKATTEAGEI  360
SFELYVQNGS GLQNTKNGEL QEFPQPPFED PENSFSYLLS GSCNYPQRAG KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-150C2H2 family protein