PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20391
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 336aa    MW: 36538.2 Da    PI: 7.2957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20391genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00022302681255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  OIT20391 230 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 268
               6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MMAGNPTNWW SMLMNGNNMH QQSQHISSSS SSSSSHFYGA SNSSLADNSN QYFPPRSLSQ  60
LLLSGFSGDE EKFGISPFHQ AGNSEDQNLN SVHIPSASNF RVNPNIDDVK PELGQLYDYH  120
HHVQNEFQAS LQEKLELSTD FTKHAAYTCR PLLANSWSQH QDMPSPASSC ITTGLLNHNV  180
LNFSSNKNNK GELKHQHPDN SSECNSTSSG GISKKARVQH SSAQPSLKVR KEKLGDRITA  240
LHQLVSPFGK TDTASVLSEA IGYIRFLQGQ IQALSSPYLG NASGSMGHIS QQSDSQHKRK  300
DLGSRGLCLV PISCMQNVGS DTGADYWAPA LGGSGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-56bHLH family protein