PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20374

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 275aa MW: 28791.2 Da PI: 8.3781

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20374	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H OIT20374 107 YKCSVCDKAFSSYQALGGHKASH 129 9***********99999998887 PP
2	zf-C2H2	13.9	0.00016	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H OIT20374 166 HVCSICHKAFPTGQALGGHKRRH 188 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MALEALKSPT AATPTLPPRY EDVDEIHNLD SWAKGKRSKR PRIDTPPTEE EYLALCLIML 60 ARSGTGTGTG TGPGLADGAT TSQQPADKKT AELPPVHKKE VATEQSYKCS VCDKAFSSYQ 120 ALGGHKASHR KITTTATAAS DDNNPSTSTS TSAVNISALN PSGRSHVCSI CHKAFPTGQA 180 LGGHKRRHYE GKLGGNSRDL GGGGGGGQSG SVLTTSDGGA STHTLRDFDL NMPASPELQL 240 GLSIDCGRKS QLLPVDQEVE SPMPAKKPRL LFSLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	6e-54	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT20374