PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20285
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 340aa    MW: 39023.7 Da    PI: 6.9245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20285genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.3e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ede+l+d++k+ G  +W +I+r+ g++R++k+c++rw++yl
         OIT20285 16 KGPWTEDEDEKLIDYIKKNGHTNWQLIPRKAGLKRCGKSCRLRWNNYL 63
                     79*********************************************7 PP
2Myb_DNA-binding51.32.6e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+e++++++  lG++ W++Ia++++ gRt++++k++++++l
         OIT20285  69 RGGFSHEEEEIIINLHSVLGNK-WSRIAAHLP-GRTDNEIKNFYNTHL 114
                      7889******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGRYPCCKLD DNDLKKGPWT EDEDEKLIDY IKKNGHTNWQ LIPRKAGLKR CGKSCRLRWN  60
NYLRPDIKRG GFSHEEEEII INLHSVLGNK WSRIAAHLPG RTDNEIKNFY NTHLKKKLLK  120
LGIDPQTHKP ISDLNSLLKF SNQFTSNSNH FVSLASTLRL QTHFTLLAKI QQLINSNLFS  180
SIQGNILSNS NPLLFESLKY ESGQPQFLDS SLANFTTTIP CLDNTNSFSN DYSSILNFLE  240
VPSRTSNKIE TIQRRLTQSF LCNDDRQNLR NGSNYSELCQ ANELNSNENQ IEGLARASTQ  300
GNCNLNQNFI PTFSELDDIA AWEIPQDDEE INTFWNTIFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-73MYB family protein