PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT20104

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 327aa MW: 35023.5 Da PI: 8.4883

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20104	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.5	5.7e-39	44	170	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg................ 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ OIT20104 44 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfihggattm 144 899***************************************************************99987777777777444444445556666666666 PP TCP 89 .........................k 89 + OIT20104 145 lgfhhqlsstgygqdpdenymkkryR 170 66655555555554433333333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEFREPNSKN QGGGTSRSDH PNDNNNNNNN DNNNSLAKST KVVKKPSKDR HTKVDGRGRR 60 IRMPALCAAR VFQLTKELGH KSEGETIEWL LQQAEPSIIA ATGTGTIPAN FSTLNVSLRS 120 SGTTISAPPS KSAPLFIHGG ATTMLGFHHQ LSSTGYGQDP DENYMKKRYR EDTSGATSPP 180 SAAKPERTGG QAHEPDQESK PGSSHASSYI PAPAMWAVAP AAGNVGNTFW MVPSTSSTMQ 240 RIGGFELSGG GRFSPVQLGS MFLQQPQPVQ QLGLGVSETN LGMLASMNAY NSRGTGIDLG 300 MNLEQHQHHN QQQGSDSGDE NHKDSQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-56	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT20104