PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20089
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 360aa    MW: 40566.6 Da    PI: 4.8108
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20089genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.66.9e-3287151165
       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 
               aag+kdrhsk++T++g+RdRRvRls ++a++f+d+qd+LG+d++s++i+WL+++ak+ai+ l + 
  OIT20089  87 AAGRKDRHSKVSTAKGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSEAIDWLIKEAKAAIDSLGKF 151
               689*********************************************************99766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MNHQLQISDE EDGSSEEEED EEEVFEENGI ENFHSHCQNQ NLQQLPMPLC PKPAKWAEEL  60
NIVTKGMKPK RAKQDLIEVH RGRIIRAAGR KDRHSKVSTA KGPRDRRVRL SPNTAIQFYD  120
VQDRLGYDRP SEAIDWLIKE AKAAIDSLGK FPKLNAKIQY SFDQLLDEGC IEQSPRFGQQ  180
NYGIPNSEYG VQNHQQEVNY DIPIQNVSLF SSADGAIFSE FQSYPHGHFL NFQSFQEDTI  240
LSSGDHQDSF LTSSIPIYSN SNLEMSRYKR SLNGNVASSN SGNGEDYSSF SLLAHHFPSV  300
LSENQVISHR EPLQSSFFPL ISGDPLSTQL QTLSYDGFSG QISSAPRIQG EEEQGTFSAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.18e-36TCP family protein