PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT20086

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 258aa MW: 29608.7 Da PI: 8.7576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20086	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g W++++ + g++R++k+c++rw++yl OIT20086 14 KGAWTEEEDLLLRRCVEMYGEGKWHKVPIRAGLNRCRKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.8	7.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l OIT20086 67 RGDFSSDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 112 899*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MNTTTISKSS GVRKGAWTEE EDLLLRRCVE MYGEGKWHKV PIRAGLNRCR KSCRLRWLNY 60 LRPHIKRGDF SSDEIDLILR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLQRKLIPLQ 120 RQDRKCRVLK ITENTIVRPR PRTFSSAKNV SLCSNKSITK TIHKEDGSKE NNICEKPIGD 180 APTDHGIQWW TSLLDNCNEI EEAAAVGSIN LEENNKLLSL LHEEISPPIN GVSNCMQEGQ 240 SGNWDDFSVD IDLWDLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-66	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT20086