PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19906
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 306aa    MW: 33580.5 Da    PI: 9.221
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19906genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.5e-20203236134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  OIT19906 203 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 236
               *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MKMTMVGHCG YLDGIPTGPV VDEDFDDILN FLDFPLESLE EDGQGVEWDA SESKFLGPIP  60
TDALMAFPPV PQGNIGNGRV KAEPNSNHPI KVTEGQGSGI FQTQSPVSVL ESSNSCSGGK  120
SISIKHDIAI PVRPRSKRPR SSALNPWILM PPISSTRFAS KKTCDARKGK EKKRKMSLLS  180
VPQIADVTKK KTTSAQQFSL KKCTHCQVTK TPQWREGPLG PKTLCNACGV RYRSGRLFPE  240
YRPAASPTFV PTLHSNSHRK VVEMRKKAIY GETSAPEEPH NVIVEGPPMS PAPEFVPMSS  300
YLFDVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.29e-44GATA family protein