PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT19834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20623.4 Da PI: 9.2197 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5e-18 | 15 | 65 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+k r+vtfskR++ ++ KAeE S+ ++a++ v++fs++gk y yss OIT19834 15 KYIESKEARYVTFSKRKASLFRKAEEFSTVTGADIGVLLFSPSGKPYSYSS 65 579**********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MARRTSRGRQ KIEMKYIESK EARYVTFSKR KASLFRKAEE FSTVTGADIG VLLFSPSGKP 60 YSYSSTSVEK ITEKFREWKQ QNIDEGKSSV FQAFDDLCKD IQDENEKGKS RELWYKVMYP 120 GAEIPPDKER LEKLVEMKLR LDKIDEAAKN HIRTERLKFD LNVVPEYEVG ESSGTHH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-20 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT19834 |