PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19741

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 364aa MW: 39381.3 Da PI: 5.0669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19741	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	51	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + OIT19741 51 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 96 79****************************.*********985 PP
2	Myb_DNA-binding	55.8	1e-17	103	147	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ OIT19741 103 RKPFSDEEDRIILQAHAVHGNK-WASIARLLP-GRTDNAIKNHWNST 147 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MENNIPENLE GYYGGGSGDA GGSVGGDDEE ALMLEDGSGS SDRKKTADRV KGPWSPEEDA 60 ILSRLVSNFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFSDEE DRIILQAHAV 120 HGNKWASIAR LLPGRTDNAI KNHWNSTLRR RCAELGKLRS DSSNVPEDVS AEKSKVSSEE 180 TQSCGDVNSS KAIEGKDVSS QENQEDNHYE DKSHEEVQRS DVANDPPTLF RPVARISAFS 240 AYGSLNAPET LVQTPRLTPI QSPDLGISKL LEGAFSDRLV PHQCGHGCCG NASLENNGSS 300 LLGPEFVDYA DAPSFSSHEL ATLATEISNV AWFKSGLENS SIEVIFNPAT RGTCGTSHLP 360 SRPF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MENNIPENLE GYYGGGSGDA GGSVGGDDEE ALMLEDGSGS SDRKKTADRV KGPWSPEEDA  60
ILSRLVSNFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFSDEE DRIILQAHAV  120
HGNKWASIAR LLPGRTDNAI KNHWNSTLRR RCAELGKLRS DSSNVPEDVS AEKSKVSSEE  180
TQSCGDVNSS KAIEGKDVSS QENQEDNHYE DKSHEEVQRS DVANDPPTLF RPVARISAFS  240
AYGSLNAPET LVQTPRLTPI QSPDLGISKL LEGAFSDRLV PHQCGHGCCG NASLENNGSS  300
LLGPEFVDYA DAPSFSSHEL ATLATEISNV AWFKSGLENS SIEVIFNPAT RGTCGTSHLP  360
SRPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	5e-97	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT19741