PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19732
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 330aa    MW: 38299.7 Da    PI: 5.6513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19732genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEdellv++++  G g+Wk+ +++ g+ R++k+c++rw +yl
         OIT19732 14 KGKWTAEEDELLVNYIQVNGEGSWKSLPKKAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.31.5e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++Ede +v+++  lG++ W++Ia++++ gRt++++k++w +
         OIT19732  67 RGKFTADEDETIVKLHSSLGNR-WSLIANHLP-GRTDNEIKNYWIS 110
                      89********************.*********.***********76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MVRAACCEKV GLKKGKWTAE EDELLVNYIQ VNGEGSWKSL PKKAGLLRCG KSCRLRWTNY  60
LRPDLKRGKF TADEDETIVK LHSSLGNRWS LIANHLPGRT DNEIKNYWIS NLRRRLYTFR  120
LHKKLIKTTA ELPKMAVAAA DDCESSRKHG RVGRSKAKNY KNINSTTFES IEKVKSSCSR  180
GGGTGVMWSE EGSIESLLPE SHIVDIEGKG LAMQRHEHQG ESEINESRNE EGEDKNKKDI  240
NVTPEKQDVW SFEEQELGQI HEQNQGNETV LEQQHNENWH DFDNWCDMNF DHLYEEELWV  300
DQWNSLNLEF GSNEECTYSD DMLFWLWNDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-67MYB family protein