PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19728
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 286aa    MW: 31443.6 Da    PI: 8.0884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19728genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.2e-19190224135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++C +t Tp+WR+gp g+ktLCnaCG++yr+ +l
  OIT19728 190 CTHCEVTRTPQWREGPLGPKTLCNACGVRYRSGRL 224
               *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MLKGFCSMNI NMVEQNCWDD IPMGPIVDED FESLLNSLDF PLESLEDDGG LGGDWDPSLY  60
QLLGPIPADA LMALPPVSRG DNANGCLNAA NEFPEAQGTV LFQTQSPISV LEHNSSCSGG  120
KSTSSNFGTK GRRSKRARSS TLNPWILMAP TSCTAFAAKK NSDAKKGKEK KRRKLSQQSS  180
VMDSSLFKKC THCEVTRTPQ WREGPLGPKT LCNACGVRYR SGRLLPEYRP AASPTFVPSL  240
HSNSHRKVIE MRRNAVEESQ GDVLETKRSF SNVTEPKICS SEYLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132174RRSKRARSSTLNPWILMAPTSCTAFAAKKNSDAKKGKEKKRRK
2170174KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-46GATA family protein