PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT19728

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 286aa MW: 31443.6 Da PI: 8.0884

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19728	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.5	9.2e-19	190	224	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C +t Tp+WR+gp g+ktLCnaCG++yr+ +l OIT19728 190 CTHCEVTRTPQWREGPLGPKTLCNACGVRYRSGRL 224 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MLKGFCSMNI NMVEQNCWDD IPMGPIVDED FESLLNSLDF PLESLEDDGG LGGDWDPSLY 60 QLLGPIPADA LMALPPVSRG DNANGCLNAA NEFPEAQGTV LFQTQSPISV LEHNSSCSGG 120 KSTSSNFGTK GRRSKRARSS TLNPWILMAP TSCTAFAAKK NSDAKKGKEK KRRKLSQQSS 180 VMDSSLFKKC THCEVTRTPQ WREGPLGPKT LCNACGVRYR SGRLLPEYRP AASPTFVPSL 240 HSNSHRKVIE MRRNAVEESQ GDVLETKRSF SNVTEPKICS SEYLFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	174	RRSKRARSSTLNPWILMAPTSCTAFAAKKNSDAKKGKEKKRRK
2	170	174	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	2e-46	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT19728