PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19588

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 344aa MW: 39417.4 Da PI: 4.5104

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19588	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	109.2	2.4e-34	49	150	2	99
NF-YC 2 lksfwekqie...katdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 l fw++q+e +a+++k ++elPlari++++k++++vkm+sa++ vl++ka e+fileltlr+w++ae krrtlk+ dia a+ + + dfl divp OIT19588 49 LLCFWKQQVEeilQASELKrKQELPLARIRRVIKSNDQVKMVSAHSIVLFAKATEMFILELTLRAWMQAELVKRRTLKRYDIARAIRNEELLDFLCDIVPL 149 568***662225678886789**************************************************************************97 PP NF-YC 99 d 99 + OIT19588 150 Q 150 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEFPKPSSVL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FLHLLRAKLL CFWKQQVEEI 60 LQASELKRKQ ELPLARIRRV IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAELV 120 KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFS 180 YQFQVEKEAN DGQGNEFHPA YEMLQLQPNN IPYQFQVEEE ALDVQGNEFH QAYQMVQPNN 240 IPQQNQFQVE ELANDGQGNE FLAAYQMVQP NDVPYQFQVE EEANGGQGNQ FHPAYEMVQP 300 NNIPASFTSI QGIPAPLMLP PAINSSAEAE FTSGGFALDN EEGL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEFPKPSSVL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FLHLLRAKLL CFWKQQVEEI  60
LQASELKRKQ ELPLARIRRV IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAELV  120
KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFS  180
YQFQVEKEAN DGQGNEFHPA YEMLQLQPNN IPYQFQVEEE ALDVQGNEFH QAYQMVQPNN  240
IPQQNQFQVE ELANDGQGNE FLAAYQMVQP NDVPYQFQVE EEANGGQGNQ FHPAYEMVQP  300
NNIPASFTSI QGIPAPLMLP PAINSSAEAE FTSGGFALDN EEGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-31	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OIT19588