PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19117
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 93aa    MW: 11164.3 Da    PI: 9.1143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19117genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.69.3e-20351551
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++  + +ye++s
  OIT19117  3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDkkNAVYEWPS 51
              889**********************************9722669***96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNAVYEWP SRDKFKQLLM  60
RYLDKPLVER LKKLTTNEMF LMKEMDAKMK IIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-12M-type_MADS family protein