PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT19033

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 177aa MW: 20962.3 Da PI: 6.4233

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19033	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	59	114	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL k+lgL+ q+k+WFqN+R+++k OIT19033 59 KKQYHRHTQHQIQELEAFFKECPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 114 688999***********************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MFQQNMFDSH NFLLDLSHKT SENEMDLIRD DEFESKSGAD TTELAPSGDD QDPNKRPKKK 60 QYHRHTQHQI QELEAFFKEC PHPDDKQRKE LGKRLGLEPL QIKFWFQNKR TQMKAHQERH 120 ENTQLRNENE KLRAENIRYK EALTTATCPN CGGPATIGEM SFDEQHLRIE NARLREE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	4e-86	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT19033