PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT08824

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 353aa MW: 38928.9 Da PI: 4.6995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08824	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	208.1	4.9e-64	180	351	1	182
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 lv++L++cAeav++++++ a+al+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+e++P+lkf+h+taNqa OIT08824 180 LVHTLMACAEAVQQENFNVADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFYETCPYLKFAHFTANQA 270 689**************************************************........44666654445555544..4************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 Ilea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +v OIT08824 271 ILEAFTNCNKVHVIDFSLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFV 351 ***************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MKRDRDREKS QDGSSSGKSK IYEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA 60 MCTTLEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSV PSNFDMIGSI EEKDLGESSS 120 SIVINEQNRI ISDDDLRAIP GGAVFATESN KRQRSCVPLT TDATTRPVVL VDSQETGVRL 180 VHTLMACAEA VQQENFNVAD ALVRHIGILA VSQSGAMRKV ATYFAEALAR RIYKIYPQDS 240 IESSYTDVLQ MHFYETCPYL KFAHFTANQA ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA 300 LALRPGGPPA FRLTGIGPPQ PDNTDALQQV GWKLAQLAET IGVEFEFRGF VTN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MKRDRDREKS QDGSSSGKSK IYEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA  60
MCTTLEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSV PSNFDMIGSI EEKDLGESSS  120
SIVINEQNRI ISDDDLRAIP GGAVFATESN KRQRSCVPLT TDATTRPVVL VDSQETGVRL  180
VHTLMACAEA VQQENFNVAD ALVRHIGILA VSQSGAMRKV ATYFAEALAR RIYKIYPQDS  240
IESSYTDVLQ MHFYETCPYL KFAHFTANQA ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA  300
LALRPGGPPA FRLTGIGPPQ PDNTDALQQV GWKLAQLAET IGVEFEFRGF VTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-135	GRAS family protein

Link Out ? help Back to Top
Ensembl	OIT08824